Class DecisionMaker
java.lang.Object
edu.msu.cme.rdp.classifier.train.validation.DecisionMaker
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Field Summary
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Constructor Summary
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Method Summary
Modifier and TypeMethodDescriptiongetBestClasspath
(edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator iterator, HashMap<String, HierarchyTree> nodeMap, boolean useSeed, int min_bootstrap_words) For each sequence, find the best class among the list of genera using all the overlapping words.
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Field Details
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NUM_OF_RUNS
public static final int NUM_OF_RUNS- See Also:
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Constructor Details
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DecisionMaker
Creates new DecisionMaker
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Method Details
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getBestClasspath
public List<ValidationClassificationResult> getBestClasspath(edu.msu.cme.rdp.readseq.utils.orientation.GoodWordIterator iterator, HashMap<String, HierarchyTree> nodeMap, boolean useSeed, int min_bootstrap_words) throws IOExceptionFor each sequence, find the best class among the list of genera using all the overlapping words. Then select a subset of words to get the assignment, repeats 100 times, count the number of votes- Throws:
IOException
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