Package edu.msu.cme.rdp.taxatree
Class UnifracTree
java.lang.Object
edu.msu.cme.rdp.taxatree.ConcretRoot<UnifracTaxon>
edu.msu.cme.rdp.taxatree.UnifracTree
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Nested Class Summary
Nested Classes -
Field Summary
Fields inherited from class edu.msu.cme.rdp.taxatree.ConcretRoot
root, taxonMap
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
addChild
(UnifracTaxon child, int parentId) void
computeUnifracSig
(int permutations, boolean weighted) void
void
Methods inherited from class edu.msu.cme.rdp.taxatree.ConcretRoot
biDirectionDepthFirst, getChild, getChildTaxon, getRootTaxid, getRootTaxonHodler, topDownVisit
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Constructor Details
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UnifracTree
public UnifracTree()
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Method Details
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computeUnifrac
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computeUnifracSig
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computeWeightedUnifrac
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printLeaves
public void printLeaves() -
addChild
- Overrides:
addChild
in classedu.msu.cme.rdp.taxatree.ConcretRoot<UnifracTaxon>
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refreshInnerTaxa
public void refreshInnerTaxa() -
addTaxon
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