Package edu.msu.cme.rdp.classifier.train
Class LineageSequenceParser
java.lang.Object
edu.msu.cme.rdp.classifier.train.LineageSequenceParser
A parser to parse a reader containing the raw sequences.
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Field Summary
Fields -
Constructor Summary
ConstructorsConstructorDescriptionLineageSequenceParser
(File inFile) Creates new RawSequenceParser to parse the input fasta file.Creates new RawSequenceParser to parse the input fasta file. -
Method Summary
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Field Details
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delimiter
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Constructor Details
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LineageSequenceParser
Creates new RawSequenceParser to parse the input fasta file.- Throws:
IOException
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LineageSequenceParser
Creates new RawSequenceParser to parse the input fasta file.- Throws:
IOException
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Method Details
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close
Closes the reader.- Throws:
IOException
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hasNext
Returns true if there is a parsed sequence available.- Throws:
IOException
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next
Returns the next parsed sequence.- Throws:
NoSuchElementException
IOException
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