Package edu.msu.cme.rdp.classifier
Class RankAssignment
java.lang.Object
edu.msu.cme.rdp.classifier.RankAssignment
A RankAssignment holds the classification result of a sequence at one rank level.
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionReturns the HierarchyTree which the query sequence is assigned to.float
Returns the estimate of confidence of the assignment.getName()
Returns the name of the assigned HierarchyTree.getRank()
Returns the rank of the assigned HiearchyTree.int
getTaxid()
Returns the taxid of the assigned HierachyTree
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Constructor Details
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RankAssignment
Creates new RankAssignment.
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Method Details
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getConfidence
public float getConfidence()Returns the estimate of confidence of the assignment. The number of times a taxon was selected out of the total number of bootstrap trials was used as an estimate of confidence in the assignment to that treenode. -
getBestClass
Returns the HierarchyTree which the query sequence is assigned to. -
getName
Returns the name of the assigned HierarchyTree. -
getRank
Returns the rank of the assigned HiearchyTree. -
getTaxid
public int getTaxid()Returns the taxid of the assigned HierachyTree
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