Hierarchy For Package picard.sam.SamErrorMetric
Class Hierarchy
- java.lang.Object
- picard.sam.SamErrorMetric.BaseErrorAggregation<CALCULATOR>
- picard.sam.SamErrorMetric.BaseErrorCalculator (implements picard.sam.SamErrorMetric.BaseCalculator)
- picard.sam.SamErrorMetric.IndelErrorCalculator
- picard.sam.SamErrorMetric.OverlappingReadsErrorCalculator
- picard.sam.SamErrorMetric.SimpleErrorCalculator
- picard.cmdline.CommandLineProgram
- picard.sam.SamErrorMetric.CollectSamErrorMetrics
- htsjdk.samtools.metrics.MetricBase
- picard.analysis.MergeableMetricBase
- picard.sam.SamErrorMetric.ErrorMetric
- picard.sam.SamErrorMetric.BaseErrorMetric
- picard.sam.SamErrorMetric.IndelErrorMetric
- picard.sam.SamErrorMetric.OverlappingErrorMetric
- picard.sam.SamErrorMetric.BaseErrorMetric
- picard.sam.SamErrorMetric.ErrorMetric
- picard.analysis.MergeableMetricBase
- picard.sam.SamErrorMetric.ReadBaseStratification
- picard.sam.SamErrorMetric.ReadBaseStratification.BinnedReadCycleStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
- picard.sam.SamErrorMetric.ReadBaseStratification.CigarOperatorsInReadStratifier
- picard.sam.SamErrorMetric.ReadBaseStratification.CollectionStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
- picard.sam.SamErrorMetric.ReadBaseStratification.ConsensusStratifier
- picard.sam.SamErrorMetric.ReadBaseStratification.FlowCellTileStratifier
- picard.sam.SamErrorMetric.ReadBaseStratification.FlowCellXStratifier
- picard.sam.SamErrorMetric.ReadBaseStratification.FlowCellYStratifier
- picard.sam.SamErrorMetric.ReadBaseStratification.GCContentStratifier
- picard.sam.SamErrorMetric.ReadBaseStratification.IndelLengthStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
- picard.sam.SamErrorMetric.ReadBaseStratification.IndelsInReadStratifier
- picard.sam.SamErrorMetric.ReadBaseStratification.LongShortHomopolymerStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
- picard.sam.SamErrorMetric.ReadBaseStratification.MismatchesInReadStratifier (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
- picard.sam.SamErrorMetric.ReadBaseStratification.NsInReadStratifier
- picard.sam.SamErrorMetric.ReadBaseStratification.PairStratifier<T,
R> (implements picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>)
Interface Hierarchy
- picard.sam.SamErrorMetric.BaseCalculator
- picard.sam.SamErrorMetric.ReadBaseStratification.RecordAndOffsetStratifier<T>
Enum Class Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
- picard.sam.SamErrorMetric.ReadBaseStratification.Consensus
- picard.sam.SamErrorMetric.ReadBaseStratification.CycleBin
- picard.sam.SamErrorMetric.ReadBaseStratification.LongShortHomopolymer
- picard.sam.SamErrorMetric.ReadBaseStratification.PairOrientation
- picard.sam.SamErrorMetric.ReadBaseStratification.ProperPaired
- picard.sam.SamErrorMetric.ReadBaseStratification.ReadDirection
- picard.sam.SamErrorMetric.ReadBaseStratification.ReadOrdinality
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)