Class InfiniumEGTFile

java.lang.Object
picard.arrays.illumina.InfiniumDataFile
picard.arrays.illumina.InfiniumEGTFile
All Implemented Interfaces:
AutoCloseable

public class InfiniumEGTFile extends InfiniumDataFile implements AutoCloseable
A class to parse the contents of an Illumina Infinium cluster (EGT) file A cluster file contains information about the clustering information used in mapping red / green intensity information to genotype calls
  • Field Details

    • EXTENSION

      public static final String EXTENSION
      See Also:
    • gencallVersion

      public String gencallVersion
    • clusterVersion

      public String clusterVersion
    • callVersion

      public String callVersion
    • normalizationVersion

      public String normalizationVersion
    • dateCreated

      public String dateCreated
    • isWGT

      public boolean isWGT
    • n

      public int[][] n
    • meanR

      public float[][] meanR
    • meanTheta

      public float[][] meanTheta
    • devR

      public float[][] devR
    • devTheta

      public float[][] devTheta
    • totalScore

      public float[] totalScore
    • rsNames

      public String[] rsNames
    • manifestName

      public String manifestName
    • numCodes

      public int numCodes
    • rsNameToIndex

      public Map<String,Integer> rsNameToIndex
  • Constructor Details

  • Method Details