Package picard.fingerprint
Class ClusteredCrosscheckMetric
java.lang.Object
htsjdk.samtools.metrics.MetricBase
picard.fingerprint.CrosscheckMetric
picard.fingerprint.ClusteredCrosscheckMetric
@DocumentedFeature(groupName="Metrics",
summary="Metrics")
public class ClusteredCrosscheckMetric
extends CrosscheckMetric
A metric class to hold the result of
ClusterCrosscheckMetrics
fingerprints.-
Nested Class Summary
Nested classes/interfaces inherited from class picard.fingerprint.CrosscheckMetric
CrosscheckMetric.DataType, CrosscheckMetric.FingerprintResult
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Field Summary
FieldsModifier and TypeFieldDescriptionThe cluster identifier to which the two groups within this metric (CrosscheckMetric.LEFT_GROUP_VALUE
andCrosscheckMetric.RIGHT_GROUP_VALUE
) belong.The number of different groups that are assigned to this cluster.Fields inherited from class picard.fingerprint.CrosscheckMetric
DATA_TYPE, LEFT_FILE, LEFT_GROUP_VALUE, LEFT_LANE, LEFT_LIBRARY, LEFT_MOLECULAR_BARCODE_SEQUENCE, LEFT_RUN_BARCODE, LEFT_SAMPLE, LOD_SCORE, LOD_SCORE_NORMAL_TUMOR, LOD_SCORE_TUMOR_NORMAL, RESULT, RIGHT_FILE, RIGHT_GROUP_VALUE, RIGHT_LANE, RIGHT_LIBRARY, RIGHT_MOLECULAR_BARCODE_SEQUENCE, RIGHT_RUN_BARCODE, RIGHT_SAMPLE
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Constructor Summary
ConstructorsConstructorDescription -
Method Summary
Methods inherited from class htsjdk.samtools.metrics.MetricBase
equals, hashCode, toString
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Field Details
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CLUSTER
The cluster identifier to which the two groups within this metric (CrosscheckMetric.LEFT_GROUP_VALUE
andCrosscheckMetric.RIGHT_GROUP_VALUE
) belong. -
CLUSTER_SIZE
The number of different groups that are assigned to this cluster. Should be the same value for all rows within the sameCLUSTER
.
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Constructor Details
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ClusteredCrosscheckMetric
public ClusteredCrosscheckMetric() -
ClusteredCrosscheckMetric
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