Package picard.flow

Class FlowBasedArgumentCollection

java.lang.Object
picard.flow.FlowBasedArgumentCollection
All Implemented Interfaces:
Serializable

public class FlowBasedArgumentCollection extends Object implements Serializable
See Also:
  • Field Details

    • FLOW_IGNORE_T0_TAG_LONG_NAME

      public static final String FLOW_IGNORE_T0_TAG_LONG_NAME
      See Also:
    • FILLING_VALUE_LONG_NAME

      public static final String FILLING_VALUE_LONG_NAME
      See Also:
    • ignoreT0Tag

      @Advanced @Argument(fullName="flow-ignore-t0-tag", doc="Ignore t0 tag in the read when create flow matrix (arcane/obsolete)", optional=true) public boolean ignoreT0Tag
    • fillingValue

      @Advanced @Argument(fullName="flow-fill-empty-bins-value", doc="Value to fill the zeros of the matrix with", optional=true) public double fillingValue
  • Constructor Details

    • FlowBasedArgumentCollection

      public FlowBasedArgumentCollection()