Class CollectQualityYieldMetrics.QualityYieldMetricsCollector

java.lang.Object
picard.analysis.CollectQualityYieldMetrics.QualityYieldMetricsCollector
Enclosing class:
CollectQualityYieldMetrics

public static class CollectQualityYieldMetrics.QualityYieldMetricsCollector extends Object
  • Field Details

    • includeSupplementalAlignments

      public final boolean includeSupplementalAlignments
  • Constructor Details

    • QualityYieldMetricsCollector

      public QualityYieldMetricsCollector(boolean useOriginalQualities, boolean includeSecondaryAlignments, boolean includeSupplementalAlignments)
  • Method Details

    • acceptRecord

      public void acceptRecord(htsjdk.samtools.SAMRecord rec, htsjdk.samtools.reference.ReferenceSequence ref)
    • finish

      public void finish()
    • addMetricsToFile

      public void addMetricsToFile(htsjdk.samtools.metrics.MetricsFile<CollectQualityYieldMetrics.QualityYieldMetrics,Integer> metricsFile)