Package picard.vcf
Enum Class GenotypeConcordanceStates.CallState
- All Implemented Interfaces:
Serializable
,Comparable<GenotypeConcordanceStates.CallState>
,Constable
- Enclosing class:
GenotypeConcordanceStates
public static enum GenotypeConcordanceStates.CallState
extends Enum<GenotypeConcordanceStates.CallState>
These states represent the relationship between the call genotype and the truth genotype relative to
a reference sequence.
The Enum constants must be in the same order as the truth state to allow for comparison.
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Nested Class Summary
Nested classes/interfaces inherited from class java.lang.Enum
Enum.EnumDesc<E extends Enum<E>>
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Enum Constant Summary
Enum ConstantsEnum ConstantDescription -
Method Summary
Modifier and TypeMethodDescriptionint
getCode()
getHet
(int allele0idx, int allele1idx) getHom
(int alleleIdx) Returns the enum constant of this class with the specified name.static GenotypeConcordanceStates.CallState[]
values()
Returns an array containing the constants of this enum class, in the order they are declared.
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Enum Constant Details
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MISSING
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HOM_REF
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HET_REF_VAR1
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HET_VAR1_VAR2
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HOM_VAR1
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HET_REF_VAR2
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HET_REF_VAR3
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HET_VAR1_VAR3
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HET_VAR3_VAR4
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HOM_VAR2
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HOM_VAR3
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NO_CALL
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LOW_GQ
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LOW_DP
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VC_FILTERED
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GT_FILTERED
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IS_MIXED
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Method Details
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values
Returns an array containing the constants of this enum class, in the order they are declared.- Returns:
- an array containing the constants of this enum class, in the order they are declared
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valueOf
Returns the enum constant of this class with the specified name. The string must match exactly an identifier used to declare an enum constant in this class. (Extraneous whitespace characters are not permitted.)- Parameters:
name
- the name of the enum constant to be returned.- Returns:
- the enum constant with the specified name
- Throws:
IllegalArgumentException
- if this enum class has no constant with the specified nameNullPointerException
- if the argument is null
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getHom
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getHet
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getCode
public int getCode()
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